REBASE::BcgI has 637 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1e-11 31.0 0.1 2e-11 30.1 0.1 1.4 1 REBASE::BcgI
Domain annotation for each sequence (and alignments):
>> REBASE::BcgI
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 30.1 0.1 2e-11 2e-11 16 188 .. 333 495 .. 330 503 .. 0.71
Alignments for each domain:
== domain 1 score: 30.1 bits; conditional E-value: 2e-11
UPF0020 16 LAaalvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvyelkaeaeeear..aelklygsDldrrvvqgareNaekag..vgdliefs 108
+ + + +l g+++ + lDP CG+G++lI a a e e r ++ +lyg+++++++ + a +N g ++li +
REBASE::BcgI 333 ITSLMAELIGINKSDFVLDPACGTGAFLISAMNRMLGQA-------------ENDDERRdiKQNRLYGIEIQQKLFTIATTNMILRGdgKSNLIRDN 416
5667899999*******************9865444444.............2223333334445*****************766650055555555 PP
UPF0020 109 qadaakLrlkeg.evdvivtnpPYGerlgskkal.ekLYseflrelkrvlrgggrlvlltaenkalekaleeralrkvkekn 188
++ + + ++g ++ i+ npPY ++ +++ + +L +f +++ ++l gg+l+++++++ ++ k +++a +k +k+
REBASE::BcgI 417 CLTFDNTI-MNGyGINKILMNPPYSQAKNDQTQHlSEL--SFIQQALEMLVVGGKLCAIVPQSTMVGKNRHDKARKKQILKQ 495
55554444.56547889*******99876655442666..6777777778888********999998887777666665555 PP
Or compare REBASE::BcgI to CDD or PaperBLAST