REBASE::M.Aba0088I has 493 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
4.3e-13 35.5 0.0 8.4e-13 34.6 0.0 1.4 1 REBASE::M.Aba0088I
Domain annotation for each sequence (and alignments):
>> REBASE::M.Aba0088I
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 34.6 0.0 8.4e-13 8.4e-13 20 143 .. 173 291 .. 167 350 .. 0.69
Alignments for each domain:
== domain 1 score: 34.6 bits; conditional E-value: 8.4e-13
UPF0020 20 lvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvyelkaeaeeearaelklygsDldrrvvqgareNaekagvgdl.iefsq 109
+v+l + k+++++ DP CG+ ++l+ a ++ + + +++ +e+ +++ e ++g D+d+ +++ + N gv++ ie ++
REBASE::M.Aba0088I 173 IVELMQPKPTDTICDPACGTAGFLVAASEYLSQHYS-----TEIFANSEVAKRF-SEETFFGYDFDSTMLRIGSMNMMLHGVENPsIENRD 257
89999********************99988888883.....3344555555444.45569**********************985266666 PP
UPF0020 110 adaakLrlkegevdvivtnpPYGerlgskkalek 143
+ + e+++ +i++npP+ +l+ + ++
REBASE::M.Aba0088I 258 SLSEAHSHIESKYSLILANPPFAGSLDYESCAKN 291
544444467889**********999987654433 PP
Or compare REBASE::M.Aba0088I to CDD or PaperBLAST