REBASE::M.Aba401I has 493 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
6.4e-13 34.9 0.0 1.2e-12 34.0 0.0 1.4 1 REBASE::M.Aba401I
Domain annotation for each sequence (and alignments):
>> REBASE::M.Aba401I
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 34.0 0.0 1.2e-12 1.2e-12 20 179 .. 173 336 .. 167 351 .. 0.69
Alignments for each domain:
== domain 1 score: 34.0 bits; conditional E-value: 1.2e-12
UPF0020 20 lvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvyelkaeaeeear.aelklygsDldrrvvqgareNaekagvgdl.iefsq 109
+v+l + k+++++ DP CG+ ++l+ a ++ + +e+ a+ e+++r e ++g D+d+ +++ + N gv++ ie ++
REBASE::M.Aba401I 173 IVELMQPKPTDTICDPACGTAGFLVAASEYLNEHYS-------TEIFANPEAAKRfSEETFFGYDFDSTMLRIGSMNMMLHGVENPrIENRD 257
89999********************99887777772.......33344455555545667***********************985266666 PP
UPF0020 110 adaakLrlkegevdvivtnpPYGerlgskkalekLYse.........flrelkrvlrgggrlvlltaenkalekaleer 179
+ + +++ +i++npP+ +l+++ +++ fl + r l++ggr+++++++ + + +++
REBASE::M.Aba401I 258 SLSEAHSHIAEKYSLILANPPFAGSLDNESCAKNIQAVvktkktellFLALFLRLLKTGGRAAVIVPDGVLFGSSKAHK 336
544444456669***********99998876555433211111222245555666666666666666665555555555 PP
Or compare REBASE::M.Aba401I to CDD or PaperBLAST