REBASE::M.Aba6200I has 552 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.9e-17 49.7 0.0 3.1e-17 49.0 0.0 1.2 1 REBASE::M.Aba6200I
Domain annotation for each sequence (and alignments):
>> REBASE::M.Aba6200I
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 49.0 0.0 3.1e-17 3.1e-17 20 166 .. 201 366 .. 196 392 .. 0.82
Alignments for each domain:
== domain 1 score: 49.0 bits; conditional E-value: 3.1e-17
UPF0020 20 lvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvye..........lkaeaeeearaelk..lygsDldrrvvqgareNaek 98
+ +l + + g++++DP CG+G++l+ + + +++ r++ + a + e+a+a l+ lyg D+d+ +v+ + N+
REBASE::M.Aba6200I 201 MTELVQPQLGHKIADPACGTGGFLLGTYQYIVTQLAIKARTNNLApdedgfvrtsVTAALTEKAQAILQesLYGYDIDATMVRLGLMNLMM 291
777888999******************9999999999999999999*****88776666666666666678******************** PP
UPF0020 99 agvgd.liefsqadaakLrlkegevdvivtnpPYGerlgskkalekLYse.......flrelkrvlrgggrlvllt 166
g+++ +i++++ + + +e+e+d++++npP+ ++++ +e+L + f + + r l++gg +++++
REBASE::M.Aba6200I 292 HGIDEpRIDYQDTLSKGYN-EEAEYDIVLANPPFTGSIDKGDINENLQLSttktellFVENIYRLLKKGGTACVIV 366
***87469****9999999.888*****************999999865411122224455566666666666665 PP
Or compare REBASE::M.Aba6200I to CDD or PaperBLAST