REBASE::M.AspNIH3II has 495 amino acids
Query: UPF0020 [M=197] Accession: PF01170.22 Description: Putative RNA methylase family UPF0020 Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.2e-12 34.0 0.0 2.5e-12 33.0 0.0 1.5 1 REBASE::M.AspNIH3II Domain annotation for each sequence (and alignments): >> REBASE::M.AspNIH3II # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 33.0 0.0 2.5e-12 2.5e-12 18 133 .. 173 279 .. 169 335 .. 0.79 Alignments for each domain: == domain 1 score: 33.0 bits; conditional E-value: 2.5e-12 UPF0020 18 aalvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvyelkaeaeeear.aelklygsDldrrvvqgareNaekagvgdlie 106 + +v++ + k ge+++DP CG+G++l a +++ + e ++ + ++++ g+++++ + +N g++ ++ REBASE::M.AspNIH3II 173 RFMVNRIDPKLGERIMDPACGTGGFLACAFDHVKEHY------------VETSADHQtLQQQILGVEKKQLPHLLCTTNMLLHGIEVPVQ 250 679***********************55544444444............3444555535566********99999*************** PP UPF0020 107 fsqadaakLr..lkegevdvivtnpPYGe 133 ++ + + + ++++dvi+tnpP+G REBASE::M.AspNIH3II 251 IRHGNTLDKPlsSWDSDIDVILTNPPFGG 279 ***99987664466679**********95 PP
Or compare REBASE::M.AspNIH3II to CDD or PaperBLAST