REBASE::M.Bau1417II has 490 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.2e-16 47.1 0.0 2e-16 46.4 0.0 1.3 1 REBASE::M.Bau1417II
Domain annotation for each sequence (and alignments):
>> REBASE::M.Bau1417II
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 46.4 0.0 2e-16 2e-16 20 149 .. 175 298 .. 170 354 .. 0.79
Alignments for each domain:
== domain 1 score: 46.4 bits; conditional E-value: 2e-16
UPF0020 20 lvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvyelkaeaeeearaelklygsDldrrvvqgareNaekagvgdl.iefs 108
+v+++ ++++ + DP CG+ ++l+ a + ++ p + ++ ++++ ++ + g D+d+ +++ + N g+++ i ++
REBASE::M.Bau1417II 175 MVKMSAPRPDDEICDPACGTAGFLVSASEQLRHSHPEVF-------TNKEQRHFFHNSMFHGYDFDSTMLRIGSMNMMLHGIEQPdIRYR 257
9**********************************9888.......3333333447777***********************9855**** PP
UPF0020 109 qadaakLrlkegevdvivtnpPYGerlgskkalekLYsefl 149
+ a ++ ++ +++ +i++npP+ +l+ + + ++L + +
REBASE::M.Bau1417II 258 DSLAENVSAEAEKYTLILANPPFAGSLDYEAMSQDLQRVVK 298
********88889*****************99999988643 PP
Or compare REBASE::M.Bau1417II to CDD or PaperBLAST