REBASE::M.Cau700975I has 590 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
4.7e-14 38.6 0.0 1.1e-13 37.5 0.0 1.5 1 REBASE::M.Cau700975I
Domain annotation for each sequence (and alignments):
>> REBASE::M.Cau700975I
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 37.5 0.0 1.1e-13 1.1e-13 20 181 .. 236 400 .. 227 414 .. 0.68
Alignments for each domain:
== domain 1 score: 37.5 bits; conditional E-value: 1.1e-13
UPF0020 20 lvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvyelkaeaeeearaelk...lygsDldrrvvqgareNaekagvgdli 105
lv l + +++++++DP CG+ ++l+ a a+ r + ++++r++ l g+D+d+ +v+ a N g ++
REBASE::M.Cau700975I 236 LVALMEPTPQQRIIDPACGTAGFLVAANDWIAHHH----RADLF------NKDTRTTFTnegLTGFDFDKTMVRIAAMNMFMHGFEEPN 314
89999********************7764433333....22222......3334422222359**********************9986 PP
UPF0020 106 efsqadaakLr.lkegevdvivtnpPYGerlgskkalekLYse.........flrelkrvlrgggrlvlltaenkalekaleeral 181
+ ++L+ ++ +d++++npP+ +l++ kL s f +++ + l+ ggr++++++e + + +++al
REBASE::M.Cau700975I 315 ISYRDSLQQLPtTFDEAFDLVLANPPFAGSLDKDAVDPKLKSVttakkteilFVHRFLQLLKPGGRAAVIVPEGVLFGSTKAHKAL 400
666669999**544558***********9998876555554431112222224455556666666666666666666555555555 PP
Or compare REBASE::M.Cau700975I to CDD or PaperBLAST