REBASE::M.Cbo67071II has 486 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
6.6e-12 31.6 0.0 1.9e-11 30.1 0.0 1.8 2 REBASE::M.Cbo67071II
Domain annotation for each sequence (and alignments):
>> REBASE::M.Cbo67071II
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -3.4 0.0 0.35 0.35 142 164 .. 81 103 .. 76 121 .. 0.68
2 ! 30.1 0.0 1.9e-11 1.9e-11 18 141 .. 166 282 .. 162 324 .. 0.84
Alignments for each domain:
== domain 1 score: -3.4 bits; conditional E-value: 0.35
UPF0020 142 ekLYseflrelkrvlrgggrlvl 164
++ Y+ +l+e+ ++++g+ r ++
REBASE::M.Cbo67071II 81 KRYYNTILDEFGENCKGRVREIY 103
56688888888888887555444 PP
== domain 2 score: 30.1 bits; conditional E-value: 1.9e-11
UPF0020 18 aalvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvyelkaeaeeearaelklygsDldrrvvqgareNaekagvgdlie 106
++v+l + k+ge DP CG+ ++ I a ++ ++++ e+e++++ + g +l + + a Na ++++i
REBASE::M.Cbo67071II 166 NVMVKLVDPKPGELCNDPACGTFGFMIAADKHIKENTD------DLFALEFDEQEFQKKKAFTGCELVHDTHRLALMNAMLHDIEGEII 248
58*************************88665555553......34466666667777888**************************** PP
UPF0020 107 fsqadaakLrlkegevdvivtnpPYGerlgskkal 141
+ + ++ ++ + +dv++tnpP+G + g ++a
REBASE::M.Cbo67071II 249 LGDTL-SNVGKSMKGFDVVLTNPPFGTKKGGERAT 282
***55.556656668***********999988887 PP
Or compare REBASE::M.Cbo67071II to CDD or PaperBLAST