REBASE::M.Cbr290I has 544 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
3.7e-12 32.4 0.0 2.8e-11 29.6 0.0 2.3 2 REBASE::M.Cbr290I
Domain annotation for each sequence (and alignments):
>> REBASE::M.Cbr290I
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -1.2 0.0 0.078 0.078 65 88 .. 40 63 .. 12 69 .. 0.77
2 ! 29.6 0.0 2.8e-11 2.8e-11 18 140 .. 172 318 .. 167 344 .. 0.73
Alignments for each domain:
== domain 1 score: -1.2 bits; conditional E-value: 0.078
UPF0020 65 lkaeaeeearaelklygsDldrrv 88
++++ e++ +++ +++g+D+++r
REBASE::M.Cbr290I 40 MLDTQEQRDEKRKQIAGIDFKPRF 63
67777888889999*****99886 PP
== domain 2 score: 29.6 bits; conditional E-value: 2.8e-11
UPF0020 18 aalvrlagwk..dgepllDPmCGsGtilI...Eaallganiapgllrefvye..............lkaeaeeearaelklygsDldrrvvq 90
+a+v++ + + +ge++ DP CG+G++l E l + + + e ++ l++ ++e+ ++ + g D+d +++
REBASE::M.Cbr290I 172 RAMVEMMEPNpaRGETICDPACGTGGFLAtsyEYLLEKYSSLESIHTEIGTNergeleeqkiftgdLLTPWREHV-DNNMFHGYDFDTTMLR 262
78998887651179*************952324445554444444433333366667677776665554444443.34449*********** PP
UPF0020 91 gareNaekagvgdl.iefsqadaakLr.....lkegevdvivtnpPYGerlgskka 140
a N+ gv+ i++++ +++ ++++ +++i++npP+ +l+++
REBASE::M.Cbr290I 263 IAAMNLIMHGVEAPdIHYQDTMSQSFStnfpqASKNAFNLILANPPFTGSLDEEDI 318
***********97549998888877776666877889***********99998765 PP
Or compare REBASE::M.Cbr290I to CDD or PaperBLAST