REBASE::M.Csp16704I has 497 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
6.4e-13 35.0 0.0 1.7e-12 33.6 0.0 1.7 1 REBASE::M.Csp16704I
Domain annotation for each sequence (and alignments):
>> REBASE::M.Csp16704I
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 33.6 0.0 1.7e-12 1.7e-12 16 193 .. 182 365 .. 180 368 .. 0.67
Alignments for each domain:
== domain 1 score: 33.6 bits; conditional E-value: 1.7e-12
UPF0020 16 LAaalvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvyelkaeaeeear.aelklygsDldrrvvqgareN..aekagvg 102
L +a+v++ + k+ e+++DP CGs ++l+E l + r ++ ++ +ee + ++ l+g ++ + + + N +++ +
REBASE::M.Csp16704I 182 LVRAMVEVLDPKAKERIYDPACGSCGFLVESFLHILYED----RAKKKKANLSVEELEFlQNDALFGKEKTPLSYAMGVMNmiLHEVKSP 267
679***************************998766655....33444444444444443555599999999999999999334555556 PP
UPF0020 103 dliefsqa..daakLrlkegevdvivtnpPYGerlgskkal.ekLYse.....flrelkrvlrgggrlvlltaenkalekaleeralrkv 184
++i+ +++ ++++++ ++++++vi++npP+G + +++ ++ + s+ fl+ + + l+++gr +++++e +++ + +++k
REBASE::M.Csp16704I 268 NIIKTNTLnkKITDIT-ENEKYEVILANPPFGGKEKDQIQNnFPIKSNatellFLQHILKSLKNNGRCAIVVPEGVLFQNSNAFVSVKKD 356
7777776411567777.7889**********97766554431222221112226777777777778888887777777766666666666 PP
UPF0020 185 keknvklgl 193
++n +l++
REBASE::M.Csp16704I 357 LLENFNLEC 365
666666655 PP
Or compare REBASE::M.Csp16704I to CDD or PaperBLAST