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Align REBASE::M.EcoJA17PI to PF01170 (UPF0020)

REBASE::M.EcoJA17PI has 501 amino acids

Query:       UPF0020  [M=197]
Accession:   PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence            Description
    ------- ------ -----    ------- ------ -----   ---- --  --------            -----------
    1.4e-13   37.1   0.0      3e-13   36.0   0.0    1.5  1  REBASE::M.EcoJA17PI  


Domain annotation for each sequence (and alignments):
>> REBASE::M.EcoJA17PI  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   36.0   0.0     3e-13     3e-13      18     171 ..     184     336 ..     180     357 .. 0.72

  Alignments for each domain:
  == domain 1  score: 36.0 bits;  conditional E-value: 3e-13
              UPF0020  18 aalvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvyelkaeaeeearaelklygsDldrrvvqgareNaekagvgdlief 107
                          + +v + + k ge+++DP CG+G++l  a   ++n +            + +  ++  ++++ g+++++     a +N    g++  +++
  REBASE::M.EcoJA17PI 184 RFMVDRVDPKLGESIMDPACGTGGFLACAFDHVKNKY-----------VKSVADHQTLQQQIHGVEKKQLPHLLATTNMLLHGIEVPVQI 262
                          67999*********************76666666666...........2344445556777*******9988899999999998888888 PP

              UPF0020 108 sqada..akLrlkegevdvivtnpPYGerlgs........kkalekLYseflrelkrvlrgggrlvlltaenka 171
                          +  +   + L   +++ dvivtnpP+G   ++        + + ++  + fl+ + +vl+++gr+++++++   
  REBASE::M.EcoJA17PI 263 RHDNTlnKPLSSWDEQLDVIVTNPPFGGTEEDgieknfpaEMQTRETADLFLQLIVEVLAKNGRAAVVLPDGTL 336
                          8766511556677779***********65333111111113344555666777888888888888887776655 PP



Or compare REBASE::M.EcoJA17PI to CDD or PaperBLAST