REBASE::M.Ftu2015II has 495 amino acids
Query: UPF0020 [M=197] Accession: PF01170.22 Description: Putative RNA methylase family UPF0020 Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 4e-12 32.3 0.1 2.6e-10 26.4 0.1 2.7 2 REBASE::M.Ftu2015II Domain annotation for each sequence (and alignments): >> REBASE::M.Ftu2015II # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 26.4 0.1 2.6e-10 2.6e-10 17 131 .. 191 287 .. 186 308 .. 0.61 2 ? -3.0 0.0 0.27 0.27 147 179 .. 318 350 .. 316 358 .. 0.78 Alignments for each domain: == domain 1 score: 26.4 bits; conditional E-value: 2.6e-10 UPF0020 17 AaalvrlagwkdgepllDPmCGsGtilIEaall.ganiapgllrefvyelkaeaeeearaelklygsDldrrvvqgareNaekagvgdli 105 ++ l +l ++k+g+ ++DP CGsG++lI aa g+n ++ +e++ ++ +l+ ++++ N+ + ++gd+i REBASE::M.Ftu2015II 191 SSLLAMLVQAKEGDEIYDPTCGSGSLLIKAAKEiGSNNFAIYG-----------QERNSTTHSLCRMNMFLH-----DINDANIQLGDTI 264 566889999**********************751555553333...........222223333444443333.....3345555555555 PP UPF0020 106 efsq.adaakLrlkegevdvivtnpPY 131 +++ kL+ ++dv+v+npP+ REBASE::M.Ftu2015II 265 RNPRiLENDKLK----KFDVVVANPPF 287 443303334444....67888888887 PP == domain 2 score: -3.0 bits; conditional E-value: 0.27 UPF0020 147 eflrelkrvlrgggrlvlltaenkalekaleer 179 +f + + l+++gr+++++++ + a+e + REBASE::M.Ftu2015II 318 AFIQHMLASLNESGRMAVVVPHGVLFRGAAEGK 350 577888888999999999999888887777655 PP
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