REBASE::M.KoxNIH2III has 489 amino acids
Query: UPF0020 [M=197] Accession: PF01170.22 Description: Putative RNA methylase family UPF0020 Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.6e-13 36.2 0.0 5.2e-13 35.2 0.0 1.5 1 REBASE::M.KoxNIH2III Domain annotation for each sequence (and alignments): >> REBASE::M.KoxNIH2III # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 35.2 0.0 5.2e-13 5.2e-13 18 135 .. 172 280 .. 168 344 .. 0.70 Alignments for each domain: == domain 1 score: 35.2 bits; conditional E-value: 5.2e-13 UPF0020 18 aalvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvyelkaeaeeearaelklygsDldrrvvqgareNaekagvgdlie 106 + +v + + k ge+++DP CG+G++l a ++n + + + ++ ++++ g+++++ a +N g++ ++ REBASE::M.KoxNIH2III 172 RFMVDRVDPKLGESIMDPACGTGGFLACAFDHVKNNY-----------VQSVADHQTLQQQIHGVEKKQLPHLLATTNMLLHGIEVPVQ 249 67999*********************77766666666...........3455556667788*******998889999999999888888 PP UPF0020 107 fsqada..akLrlkegevdvivtnpPYGerl 135 ++ + + L +++ dvivtnpP+G REBASE::M.KoxNIH2III 250 IRHDNTlnKPLSSWDEQLDVIVTNPPFGGTE 280 88766511556677779***********643 PP
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