REBASE::M.Kpn62629I has 544 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.4e-11 30.6 0.0 9.7e-11 27.8 0.0 2.3 2 REBASE::M.Kpn62629I
Domain annotation for each sequence (and alignments):
>> REBASE::M.Kpn62629I
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -1.5 0.0 0.095 0.095 65 87 .. 40 62 .. 12 68 .. 0.78
2 ! 27.8 0.0 9.7e-11 9.7e-11 20 140 .. 174 318 .. 168 344 .. 0.71
Alignments for each domain:
== domain 1 score: -1.5 bits; conditional E-value: 0.095
UPF0020 65 lkaeaeeearaelklygsDldrr 87
++++ e++ +++ +++g+D+++r
REBASE::M.Kpn62629I 40 MLDTQEQRDEKRKQIAGVDFKPR 62
67777888889999*****9887 PP
== domain 2 score: 27.8 bits; conditional E-value: 9.7e-11
UPF0020 20 lvrlag..wkdgepllDPmCGsGtilI...Eaallganiapgllrefvye..............lkaeaeeearaelklygsDldrrvvq 90
+v++ + +ge++ DP CG+G++l E l + + + e ++ l++ ++ + ++ + g D+d +++
REBASE::M.Kpn62629I 174 MVEMMEpnPARGETICDPACGTGGFLAtsyEYLLEKYSSLESIHTEIGTNergeleeqkiftgdLLTPWRDH-VDNNMFHGYDFDTTMLR 262
665554114579*************95333555555555544444444446666666666555433333322.244459*********** PP
UPF0020 91 gareNaekagvgdl.iefsqadaakLr.....lkegevdvivtnpPYGerlgskka 140
a N+ gv++ i++++ +++ ++++ +++i++npP+ +l+++
REBASE::M.Kpn62629I 263 IAAMNLIMHGVEEPdIHYQDTMSQSFStnfpqASRNAFNLILANPPFTGSLDEEDI 318
***********98549999888887777776877889***********99998764 PP
Or compare REBASE::M.Kpn62629I to CDD or PaperBLAST