REBASE::M.Llu27648I has 472 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.2e-12 34.0 0.0 2.8e-12 32.9 0.0 1.6 1 REBASE::M.Llu27648I
Domain annotation for each sequence (and alignments):
>> REBASE::M.Llu27648I
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 32.9 0.0 2.8e-12 2.8e-12 18 177 .. 153 313 .. 149 323 .. 0.79
Alignments for each domain:
== domain 1 score: 32.9 bits; conditional E-value: 2.8e-12
UPF0020 18 aalvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvyelkaeaeeearaelklygsDldrrvvqgareNaekagvgdlief 107
++v+l + +ge+ +DP G+G++lI a ++ + + a+++++++ +yg++l + + a Na +++ i +
REBASE::M.Llu27648I 153 ESMVELIKPLAGERVQDPAVGTGGFLINADRYIKTQTD------DLHDLPAAKQKFQKQEAFYGVELVPDTHRLALMNAMLHDIEGDILL 236
589************************99766666664......44477888889999999***************************** PP
UPF0020 108 sqadaakLrlkegevdvivtnpPYGerlgskkal.ekLY.s......eflrelkrvlrgggrlvlltaenkalekale 177
+ ++ dvi+tnpP+G + g +a ++++ + fl+ + r lr ggr+++++++n +e+ ++
REBASE::M.Llu27648I 237 GDTLGPTGA-GLQKADVILTNPPFGTKKGGGGATrDDITfPtsnkqlVFLQHIYRGLRPGGRAAVVLPDNVLFEDGVG 313
996554333.44589***********9988877754443211222225888889999999999999999988887665 PP
Or compare REBASE::M.Llu27648I to CDD or PaperBLAST