REBASE::M.Mva1261III has 518 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
4.3e-12 32.2 0.0 7.5e-12 31.5 0.0 1.4 1 REBASE::M.Mva1261III
Domain annotation for each sequence (and alignments):
>> REBASE::M.Mva1261III
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 31.5 0.0 7.5e-12 7.5e-12 20 140 .. 173 307 .. 168 371 .. 0.78
Alignments for each domain:
== domain 1 score: 31.5 bits; conditional E-value: 7.5e-12
UPF0020 20 lvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvye.............lkaeaeeearaelklygsDldrrvvqgareN 95
+v++++ +++e+ DP CG+ ++l + + n+ + f + l++e + +++ e ++g+D+d+ +++ + N
REBASE::M.Mva1261III 173 IVEMTEPQPTETVCDPACGTAGFLA-RTMEYLNRTHSSE--FG-KftdddgnmiysgdLLEEYRSHIN-EKMFWGFDFDSTMLRVSSMN 256
799*****************99985.5566666664332..33.246789999988876666666555.445***************** PP
UPF0020 96 aekagvgd.liefsqadaakLr.....lkegevdvivtnpPYGerlgskka 140
gv++ i +++ ++++ ++e+ +dvi++npP+ +l++ +
REBASE::M.Mva1261III 257 MLLHGVSGaNILYQDSLNKSILdrypaQAENFFDVILANPPFKGSLDESNI 307
*9999976257788777777656888777889**********999988765 PP
Or compare REBASE::M.Mva1261III to CDD or PaperBLAST