REBASE::M.PaeLWI has 524 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
2.4e-12 33.0 0.0 4.8e-12 32.1 0.0 1.5 1 REBASE::M.PaeLWI
Domain annotation for each sequence (and alignments):
>> REBASE::M.PaeLWI
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 32.1 0.0 4.8e-12 4.8e-12 18 141 .. 179 316 .. 174 371 .. 0.84
Alignments for each domain:
== domain 1 score: 32.1 bits; conditional E-value: 4.8e-12
UPF0020 18 aalvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvye..........lkaeaeeearaelklygsDldrrvvqgareNaekag 100
a+++l ++++++ DP CG+ ++l + + n+++ +++ l e ++ + + ++g+D+d +++ + N g
REBASE::M.PaeLWI 179 DAMIELIAPQPTDVICDPACGTAGFLA-RTMEYLNRVHSSPEGTFSDedgnlhysgdL-LEPYRQHINSQMFWGFDFDTTMLRVSSMNMMLHG 269
599**********************85.677777888655555554488889887743.333344445667********************** PP
UPF0020 101 vgd.liefsqadaakLr.....lkegevdvivtnpPYGerlgskkal 141
v++ i +++ ++++ ++++ +dv+++npP+ +l++++++
REBASE::M.PaeLWI 270 VNGaNIRYQDSLSKSIKehyprQEQNFFDVVLANPPFKGSLDETNTN 316
976379**********999886555689*********9999998776 PP
Or compare REBASE::M.PaeLWI to CDD or PaperBLAST