REBASE::M.PgaP129IV has 630 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
3.3e-12 32.6 0.0 4.4e-11 28.9 0.0 2.1 1 REBASE::M.PgaP129IV
Domain annotation for each sequence (and alignments):
>> REBASE::M.PgaP129IV
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 28.9 0.0 4.4e-11 4.4e-11 18 137 .. 142 247 .. 138 256 .. 0.79
Alignments for each domain:
== domain 1 score: 28.9 bits; conditional E-value: 4.4e-11
UPF0020 18 aalvrlagwkdgepllDPmCGsGtilIEaal..lganiapgllrefvyelkaeaeeearaelklygsDldrrvvqgareNaekagvgdli 105
+a+v + + ++ge+++DP CG+G++l aal l+++ ap l+g+D+d+ + a e ++++
REBASE::M.PgaP129IV 142 RAMVSILEPHAGEMIIDPACGTGGFL-SAALdyLQEENAP---------------------GTLVGIDKDSDLSLLASALSEVHSGDQKV 209
89***********************8.5666223333443.....................34799999998888887777777778888 PP
UPF0020 106 efsqadaakLr......lkegevdvivtnpPYGerlgs 137
++++a+ +L + ge+d+++tnpP+G ++g
REBASE::M.PgaP129IV 210 QVVNANSLSLSalsdagVQFGEYDLVLTNPPFGSKIGI 247
888888888887767777789*************9985 PP
Or compare REBASE::M.PgaP129IV to CDD or PaperBLAST