REBASE::M.PinDOK11I has 472 amino acids
Query: UPF0020 [M=197] Accession: PF01170.22 Description: Putative RNA methylase family UPF0020 Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2e-12 33.3 0.0 4.5e-12 32.2 0.0 1.5 1 REBASE::M.PinDOK11I Domain annotation for each sequence (and alignments): >> REBASE::M.PinDOK11I # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 32.2 0.0 4.5e-12 4.5e-12 18 177 .. 153 306 .. 149 318 .. 0.85 Alignments for each domain: == domain 1 score: 32.2 bits; conditional E-value: 4.5e-12 UPF0020 18 aalvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvyelkaeaeeearaelklygsDldrrvvqgareNaekagvgdlief 107 a+vr+ + + ge+++DP G+ ++lI a + +n+ + + ar+ ++ ++++ + + N g+++++ REBASE::M.PinDOK11I 153 DAMVRVLQPDLGETIQDPAAGTAGFLISAQTYITNRH-------------NSSAYARNPPRFQAVEIEGDTYRLCLMNIFLHGMDGRVIH 229 69*****************************999999.............3445566666699**************************9 PP UPF0020 108 sqadaakLrlkegevdvivtnpPYGerlgskkal.ekLYse.......flrelkrvlrgggrlvlltaenkalekale 177 +a + ++ + + dvi++npP+G ++g ++a ++L+ fl+++ + l +gr+++++++n +e+ ++ REBASE::M.PinDOK11I 230 GDALTHDAEELT-SPDVIIANPPFGTSVGGARARrDDLHFRtsnkqllFLQRIVQSLPANGRAAVVLPDNVLFEENVG 306 999999999666.89****************99988998542223334788888889999999999999999988665 PP
Or compare REBASE::M.PinDOK11I to CDD or PaperBLAST