REBASE::M.Ple25539I has 489 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
5.9e-13 35.1 0.0 1.1e-12 34.2 0.0 1.4 1 REBASE::M.Ple25539I
Domain annotation for each sequence (and alignments):
>> REBASE::M.Ple25539I
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 34.2 0.0 1.1e-12 1.1e-12 19 148 .. 175 296 .. 169 351 .. 0.77
Alignments for each domain:
== domain 1 score: 34.2 bits; conditional E-value: 1.1e-12
UPF0020 19 alvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvyelkaeaeeearaelk...lygsDldrrvvqgareNaekagvgdl. 104
+vrl ++++++ DP CG+ ++lI a ++ + e+ e+ ++ + g+D dr +++ + N+ +++
REBASE::M.Ple25539I 175 MMVRLLAPTPDDKICDPACGTAGFLISSAEYIREKYEA-----------EMTSEQWDHFAggmFSGFDTDRTMLRLSAMNLMLHSINQPn 253
69***************************999999932...........22333333333456*******************99998753 PP
UPF0020 105 iefsqadaakLrlkegevdvivtnpPYGerlgskkalekLYsef 148
i++++ + + ++e+d++++npP+ ++++ ++L +
REBASE::M.Ple25539I 254 IDYVDSVSK-QNDITSEYDIVLANPPFTGTVDAESIHDNLKTVC 296
777775444.4447789**********99998888777776655 PP
Or compare REBASE::M.Ple25539I to CDD or PaperBLAST