REBASE::M.Rba9517I has 576 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
7.9e-13 34.6 0.0 2.1e-12 33.3 0.0 1.7 1 REBASE::M.Rba9517I
Domain annotation for each sequence (and alignments):
>> REBASE::M.Rba9517I
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 33.3 0.0 2.1e-12 2.1e-12 17 180 .. 175 382 .. 170 393 .. 0.65
Alignments for each domain:
== domain 1 score: 33.3 bits; conditional E-value: 2.1e-12
UPF0020 17 AaalvrlagwkdgepllDPmCGsGtilIEaa..llganiapgllrefvye............................lkaeaeeear... 74
a +v + + + g++++DP CG+G++lI a +l+++ p l++e +
REBASE::M.Rba9517I 175 RAMMVAMVDPDLGDTIFDPACGTGGFLIDAVehVLARYSSPELVKEAPIYgetwlenkgwtleeakrqipnlqtykrgP--------Adri 257
5789**************************7335566666766666555489********9999999888665543332........2233 PP
UPF0020 75 .......aelk..lygsDldrrvvqgareN.....aekagvgdliefsqadaakLr..lkegevdvivtnpPYGerlgskkalekLYse.. 147
+ +yg+D r++++ a N +++a+++ ++s+ L+ + ++vi++npP+ l + ++L +
REBASE::M.Rba9517I 258 ptggwemL--ErsVYGFDVSRQMMRIAMMNmvlhgLRNANIKRANTLSE--TGGLTdeDLKRRYRVILSNPPFAGVLPKDSIRKDLPTKsk 344
34554334..355*****************3222234444444444433..334555545568**********866655555455533212 PP
UPF0020 148 .....flrelkrvlrgggrlvlltaenkalekaleera 180
fl + + l+ ggr +++++e + + ++r+
REBASE::M.Rba9517I 345 ksellFLGVMMQALAPGGRCAVVLPEGVLFGSTSAHRD 382
22222566667777777777777666666666655555 PP
Or compare REBASE::M.Rba9517I to CDD or PaperBLAST