REBASE::M.SenPU131II has 512 amino acids
Query: UPF0020 [M=197] Accession: PF01170.22 Description: Putative RNA methylase family UPF0020 Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.2e-11 30.8 0.7 3.2e-10 26.1 0.2 2.8 2 REBASE::M.SenPU131II Domain annotation for each sequence (and alignments): >> REBASE::M.SenPU131II # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -1.8 0.0 0.12 0.12 137 156 .. 159 178 .. 155 184 .. 0.77 2 ! 26.1 0.2 3.2e-10 3.2e-10 19 132 .. 193 298 .. 190 309 .. 0.83 Alignments for each domain: == domain 1 score: -1.8 bits; conditional E-value: 0.12 UPF0020 137 skkalekLYseflrelkrvl 156 + ++l +LY+ +lre+ REBASE::M.SenPU131II 159 EMHTLSRLYETMLREMRDAA 178 5677899********98755 PP == domain 2 score: 26.1 bits; conditional E-value: 3.2e-10 UPF0020 19 alvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvyelkaeaeeear.aelklygsDldrrvvqgareNaekagvgd.li 105 +v++ + + ge+ lDP CG+G++l+Ea ++ +++e ++ +e +++g + ++ + N+ g++ +i REBASE::M.SenPU131II 193 FMVEVMDPQLGESVLDPACGTGGFLVEAFEHLERQC------------KTVEDREVlQESSIFGGEAKSLPYLLVQMNLLLHGLEYpRI 269 599999*********************977666666............4566666667788******9999999999999999986368 PP UPF0020 106 efsqadaakLr..lkegevdvivtnpPYG 132 + ++ Lr +++ vdvi+tnpP+G REBASE::M.SenPU131II 270 DPENSLRFPLRemGDKDRVDVILTNPPFG 298 888888888886656679**********9 PP
Or compare REBASE::M.SenPU131II to CDD or PaperBLAST