REBASE::M.SspRSPHI has 490 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
2.2e-14 39.7 0.0 3.7e-14 39.0 0.0 1.3 1 REBASE::M.SspRSPHI
Domain annotation for each sequence (and alignments):
>> REBASE::M.SspRSPHI
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 39.0 0.0 3.7e-14 3.7e-14 18 135 .. 155 263 .. 151 271 .. 0.82
Alignments for each domain:
== domain 1 score: 39.0 bits; conditional E-value: 3.7e-14
UPF0020 18 aalvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvyelkaeaeeearaelklygsDldrrvvqgareNaekagvgdlie.f 107
a+v++ + ++ e+ DP G+G++l+ a ++ ++ + ++a ++ +e kl g D+ ++vv+ + N+ g+g+ + +
REBASE::M.SspRSPHI 155 DAIVEVMDPQPSETVHDPAAGTGGFLLSAYDHMRQQPA---------ATDRAVARRLRETKLSGNDIVPEVVRLCAMNLYLHGIGGDQSpV 236
5899***********************99866666663.........34566666668999***********************9766515 PP
UPF0020 108 sqadaakLrlkegevdvivtnpPYGerl 135
+ ada + g +dvi++npP+G+r
REBASE::M.SspRSPHI 237 RHADALTAD-DGGRYDVILSNPPFGKRQ 263
555555444.667*************96 PP
Or compare REBASE::M.SspRSPHI to CDD or PaperBLAST