REBASE::M.TcoKWC4IV has 489 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.8e-12 33.5 0.0 3.6e-12 32.5 0.0 1.5 1 REBASE::M.TcoKWC4IV
Domain annotation for each sequence (and alignments):
>> REBASE::M.TcoKWC4IV
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 32.5 0.0 3.6e-12 3.6e-12 20 149 .. 176 297 .. 170 352 .. 0.73
Alignments for each domain:
== domain 1 score: 32.5 bits; conditional E-value: 3.6e-12
UPF0020 20 lvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvyelkaeaeeear.aelklygsDldrrvvqgareNaekagvgd.lief 107
+vrl + ++++++ DP CG+ ++l+ aa ++ + e+ ++ a + g+D dr +++ + N+ +++ +i++
REBASE::M.TcoKWC4IV 176 MVRLLKPTPDDRICDPACGTAGFLVSAAEYIRETHGNR---------MTPEQWEHfASSLMTGFDTDRTMLRLSAMNLMLHSITNpRIDY 256
9***************************9999988322.........233333333344499****************999887625777 PP
UPF0020 108 sqadaakLrlkegevdvivtnpPYGerlgskkalekLYsefl 149
+ ++ + +e+ +i++npP+ ++++ ++L +
REBASE::M.TcoKWC4IV 257 LDSVSKENN-HASEFSIILANPPFTGTVDAESIHDNLKAVCN 297
775555444.6779**********999988887777766554 PP
Or compare REBASE::M.TcoKWC4IV to CDD or PaperBLAST