REBASE::M.TspPM5II has 521 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
2e-12 33.3 0.0 7.3e-12 31.5 0.0 1.9 2 REBASE::M.TspPM5II
Domain annotation for each sequence (and alignments):
>> REBASE::M.TspPM5II
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 31.5 0.0 7.3e-12 7.3e-12 18 134 .. 161 272 .. 157 281 .. 0.78
2 ? -2.6 0.0 0.2 0.2 147 173 .. 306 332 .. 304 337 .. 0.88
Alignments for each domain:
== domain 1 score: 31.5 bits; conditional E-value: 7.3e-12
UPF0020 18 aalvrlagwkdgepllDPmCGsGtilIEaa.llganiapgllrefvyelkaeaeeearaelklygsDldrrvvqgareNaekagvgdlie. 106
+a+v + + k+g+++ DP CG+G++l+ a ++++ ++++r++ +lk+ea l g ++ ++ + + N+ g+gd +
REBASE::M.TspPM5II 161 SAIVDVMQPKPGQRICDPACGTGGFLLAAHdYIVKHYSQQMNRDQRRFLKHEA---------LHGWEIVDAAARLCVMNLFLHGIGDDESe 242
799************************98724555555566666666666655.........89*********************986541 PP
UPF0020 107 fsqad.aakLr.lkegevdvivtnpPYGer 134
s a +Lr ++ + +d+++tnpP+G++
REBASE::M.TspPM5II 243 HSPIRvADSLRsHPGDYFDLVLTNPPFGRK 272
33333144577557779***********86 PP
== domain 2 score: -2.6 bits; conditional E-value: 0.2
UPF0020 147 eflrelkrvlrgggrlvlltaenkale 173
+fl+ +k+ l+ +g +++++++n +e
REBASE::M.TspPM5II 306 NFLQHVKSLLKAHGQAAIVVPDNVLFE 332
589999*************99998887 PP
Or compare REBASE::M.TspPM5II to CDD or PaperBLAST