REBASE::M.Vvu61306I has 512 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.1e-11 31.0 0.0 2.6e-11 29.7 0.0 1.6 1 REBASE::M.Vvu61306I
Domain annotation for each sequence (and alignments):
>> REBASE::M.Vvu61306I
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 29.7 0.0 2.6e-11 2.6e-11 19 141 .. 171 305 .. 166 320 .. 0.79
Alignments for each domain:
== domain 1 score: 29.7 bits; conditional E-value: 2.6e-11
UPF0020 19 alvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvye...........lkaeaeeearaelklygsDldrrvvqgareNae 97
+v++ ++++++++ DP CG+ ++l + + ++ + + e +y l++ + +++ + ++g+D+d+ +++ + N
REBASE::M.Vvu61306I 171 MMVEMLDVQPTDVICDPACGTAGFL-SRSMEYLTRTH-TSPESIYDdedgnpvytgdLLHDYQDHIN-SQMFWGFDFDSTMLRVSAMNML 257
59*******************9997.35555555553.22244444677789988866666665554.456*****************99 PP
UPF0020 98 kagvg.dliefsqadaakLr...lkegevdvivtnpPYGerlgskkal 141
gv+ i++++ ++++ ++e+ +d i++npP+ +l+++ +
REBASE::M.Vvu61306I 258 LHGVSaANITYQDSLNKSFVgqpQEENFFDKILANPPFKGSLDEQSVN 305
99997257999999999998877777789*********9999987655 PP
Or compare REBASE::M.Vvu61306I to CDD or PaperBLAST