REBASE::M.XbaD13I has 491 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
7.9e-13 34.7 0.0 2.5e-12 33.0 0.0 1.8 2 REBASE::M.XbaD13I
Domain annotation for each sequence (and alignments):
>> REBASE::M.XbaD13I
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -3.5 0.0 0.38 0.38 81 105 .. 97 121 .. 86 128 .. 0.79
2 ! 33.0 0.0 2.5e-12 2.5e-12 21 132 .. 174 277 .. 168 287 .. 0.78
Alignments for each domain:
== domain 1 score: -3.5 bits; conditional E-value: 0.38
UPF0020 81 gsDldrrvvqgareNaekagvgdli 105
g D + ++++a e a+++ +++
REBASE::M.XbaD13I 97 GGDRITTLIRTAFEDANNYMKNGTL 121
7788899999999999999877765 PP
== domain 2 score: 33.0 bits; conditional E-value: 2.5e-12
UPF0020 21 vrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvyelkaeaeeearaelk.lygsDldrrvvqgareN..aekagvgdliefsq 109
v+ + + ge++lDP CG+G++l+ a ++ a + e+++r + ++g+++++ + +N +++ v + +
REBASE::M.XbaD13I 174 VEQVNPRLGETILDPACGTGGFLVCAIEHLRKQA-------------KTEADERIIQDcFAGIEKKHLPHVLCMTNlmLHSIDVPSNVRHDN 252
666778899***************8766666666.............455566655557******986555666661156777788888889 PP
UPF0020 110 adaakLr..lkegevdvivtnpPYG 132
a+ Lr +++ vdvivtnpP+G
REBASE::M.XbaD13I 253 TLARPLRdwGPKERVDVIVTNPPFG 277
9999***9988889**********9 PP
Or compare REBASE::M.XbaD13I to CDD or PaperBLAST