REBASE::M1.SmoLVII has 249 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
5.4e-13 35.2 0.0 2.9e-12 32.8 0.0 2.0 1 REBASE::M1.SmoLVII
Domain annotation for each sequence (and alignments):
>> REBASE::M1.SmoLVII
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 32.8 0.0 2.9e-12 2.9e-12 27 158 .. 55 168 .. 49 201 .. 0.84
Alignments for each domain:
== domain 1 score: 32.8 bits; conditional E-value: 2.9e-12
UPF0020 27 kdgepllDPmCGsGtilIEaallganiapgllrefvyelkaeaeeearaelklygsDldrrvvqgare..NaekagvgdliefsqadaakL 115
k+++ lD + G+Gt l+Ea ll ++i+ g+D+++ ++++re N e+ g ++++ + + da++L
REBASE::M1.SmoLVII 55 KENDLVLDQFAGGGTTLVEAKLLNRDII--------------------------GVDINEVSLERCREkvNFEHEGSNGKVYIHKGDARNL 119
67788999******************99..........................************8644889****************** PP
UPF0020 116 r.lkegevdvivtnpPYGerlgskkal.ekLY....seflrelkrvlrg 158
+++++d i t pPY + ++ ++ e+L ++fl+e+k+v +
REBASE::M1.SmoLVII 120 DfISDESIDFICTHPPYANIIQYSDNIeEDLShlkiPQFLEEMKKVAFE 168
*98888**************99988886777522235788888876544 PP
Or compare REBASE::M1.SmoLVII to CDD or PaperBLAST