REBASE::M2.Bag18758II has 465 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
9.7e-14 37.6 0.1 4.8e-09 22.3 0.0 2.3 2 REBASE::M2.Bag18758II
Domain annotation for each sequence (and alignments):
>> REBASE::M2.Bag18758II
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 22.3 0.0 4.8e-09 4.8e-09 28 54 .. 81 107 .. 78 140 .. 0.84
2 ! 12.9 0.0 3.7e-06 3.7e-06 106 136 .. 254 284 .. 247 288 .. 0.87
Alignments for each domain:
== domain 1 score: 22.3 bits; conditional E-value: 4.8e-09
UPF0020 28 dgepllDPmCGsGtilIEaallgania 54
++++ lDP+CGsGt l+Ea l +++++
REBASE::M2.Bag18758II 81 QTDVVLDPFCGSGTTLVEALLRSRQAI 107
6899***************99888877 PP
== domain 2 score: 12.9 bits; conditional E-value: 3.7e-06
UPF0020 106 efsqadaakLrlkegevdvivtnpPYGerlg 136
++ + daa+++l+ ++vd+ivt pPY ++++
REBASE::M2.Bag18758II 254 SVIEGDAAEIKLPAHSVDLIVTSPPYLDSVD 284
567889*****9999***********99875 PP
Or compare REBASE::M2.Bag18758II to CDD or PaperBLAST