REBASE::M2.Bth238III has 503 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.2e-11 30.8 0.0 1.1e-10 27.6 0.0 2.4 2 REBASE::M2.Bth238III
Domain annotation for each sequence (and alignments):
>> REBASE::M2.Bth238III
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -0.6 0.0 0.049 0.049 88 149 .. 74 137 .. 27 145 .. 0.77
2 ! 27.6 0.0 1.1e-10 1.1e-10 19 133 .. 182 283 .. 175 293 .. 0.80
Alignments for each domain:
== domain 1 score: -0.6 bits; conditional E-value: 0.049
UPF0020 88 vvqgareNaekagvgdliefsqadaakLr.lkegevdvivtnpPYGerlgskkal.ekLYsefl 149
+ +ga N+ + + ++ ++ q+ +++++ ++ + d i ++ P+ +r + ++L ++f+
REBASE::M2.Bth238III 74 IPEGAHWNDVRQTPKNVGAAIQKAMRAIEsANPDLLDGIFGDAPWTNRERLPDETlKNLIEHFS 137
5567888888888888888888888889854444799999999999886654443366666665 PP
== domain 2 score: 27.6 bits; conditional E-value: 1.1e-10
UPF0020 19 alvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvyelkaeaeeearaelklygsDldrrvvqgareNaekagvgdlief 107
+ +l ++ge+++DP CG+G++lI al + ++ g + ++lklyg + + ar N+ gv+d+ +
REBASE::M2.Bth238III 182 LMTQLLAPQAGESIYDPTCGTGGMLIS-ALDEVKRSEGEY----------------RTLKLYGQERNLITSSIARMNLFLHGVEDFEII 253
57888899******************6.577777774555................7899*************************9888 PP
UPF0020 108 sq...adaakLr.lkegevdvivtnpPYGe 133
+ ad ++++ + ++dvi++npPY +
REBASE::M2.Bth238III 254 RGdtlADPKHIEgDRLRQFDVILANPPYSI 283
751224555566744448**********76 PP
Or compare REBASE::M2.Bth238III to CDD or PaperBLAST