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Align REBASE::M2.Mma5219I to PF01170 (UPF0020)

REBASE::M2.Mma5219I has 499 amino acids

Query:       UPF0020  [M=197]
Accession:   PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence            Description
    ------- ------ -----    ------- ------ -----   ---- --  --------            -----------
    5.1e-13   35.3   0.0      2e-12   33.3   0.0    1.9  2  REBASE::M2.Mma5219I  


Domain annotation for each sequence (and alignments):
>> REBASE::M2.Mma5219I  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.3   0.0     2e-12     2e-12      18     133 ..     182     284 ..     176     288 .. 0.83
   2 ?   -2.5   0.0      0.19      0.19      88     116 ..     401     428 ..     350     461 .. 0.59

  Alignments for each domain:
  == domain 1  score: 33.3 bits;  conditional E-value: 2e-12
              UPF0020  18 aalvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvyelkaeaeeearaelklygsDldrrvvqgareNaekagvgdlief 107
                          + +  + + k ge+++DP CGsG++l+ aall+++                   ++ +++klyg +++    + ar N    g +d+  +
  REBASE::M2.Mma5219I 182 RLMSLIVDPKSGESIYDPTCGSGGMLLNAALLAKEKG-----------------QEYRNIKLYGQEINIITSAIARMNMFLHGFEDFYVI 254
                          567778899************************9999.................4557899*************************9988 PP

              UPF0020 108 sqadaakLr....lkegevdvivtnpPYGe 133
                          +     +       + +++d++++npPY +
  REBASE::M2.Mma5219I 255 RGDTLSNPAfvedDRVKKFDIVIANPPYSI 284
                          864433322444545559**********65 PP

  == domain 2  score: -2.5 bits;  conditional E-value: 0.19
              UPF0020  88 vvqgareNaekagvgdliefsqadaakLr 116
                           +++++ ++e+  ++++ ++   d+++++
  REBASE::M2.Mma5219I 401 SINTTQAKLESEHIDKI-HAAYSDFKSIE 428
                          34444444444444332.33333544444 PP



Or compare REBASE::M2.Mma5219I to CDD or PaperBLAST