VIMSS10160727 has 464 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.1e-12 34.1 0.0 2.3e-12 33.1 0.0 1.5 1 VIMSS10160727
Domain annotation for each sequence (and alignments):
>> VIMSS10160727
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 33.1 0.0 2.3e-12 2.3e-12 19 145 .. 160 280 .. 157 339 .. 0.73
Alignments for each domain:
== domain 1 score: 33.1 bits; conditional E-value: 2.3e-12
UPF0020 19 alvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvyelkaeaeeearaelklygsDldrrvvqgareNaekagvgdliefsqadaak 114
a+v+ + + ++ + DP G+G++lI a ++i +++ + +++ e+++ + +l g++l ++ + + N+ ++ +f++ d +
VIMSS10160727 160 AIVKAVDPDHDDDIHDPAAGTGGFLIHAF---EHILE---KTNEGLDLSRDERRELMTENLSGMELVPETRRLGLMNLALHDLQ-PQNFEVGDSLS 248
899999********************884...44442...222222333333344466669*****************998876.6789999**** PP
UPF0020 115 Lr.lkegevdvivtnpPYGerlgskkalekLY 145
L ++++++dvi+tnpPYG ++k+a +++
VIMSS10160727 249 LGpHTDESYDVILTNPPYGGNQKKKRARDDFM 280
*987888***************9999987664 PP
Or compare VIMSS10160727 to CDD or PaperBLAST