VIMSS158110 has 382 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.4e-64 203.6 0.0 1.8e-64 203.2 0.0 1.2 1 VIMSS158110
Domain annotation for each sequence (and alignments):
>> VIMSS158110
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 203.2 0.0 1.8e-64 1.8e-64 1 195 [. 163 367 .. 163 369 .. 0.97
Alignments for each domain:
== domain 1 score: 203.2 bits; conditional E-value: 1.8e-64
UPF0020 1 RgyRvfngpapLketLAaalvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvye............lkaeaeeearaelk..lygsDl 84
RgyR ++g ap+ket+Aaalv l+ w++++p++DP CGsGti+IEaal+g+niapg++refv+e +++eae a+++++ ++g D+
VIMSS158110 163 RGYRLAQGSAPIKETMAAALVLLTSWHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSEtwdwmpkqiwadARQEAEDLANYDQPlnIIGGDI 260
9*************************************************************************************777777****** PP
UPF0020 85 drrvvqgareNaekagvgdliefsqadaakLrlkegevdvivtnpPYGerlgskkalekLYseflrelkrvlrgggrlvlltaenkalekaleeralr 182
d+r+++ a++Na +ag+gdli+f+q+++a+++ +e+e++v+v+npPYGerl++++a+++LY+e++ kr + + ++v+++++++ +e++++++a++
VIMSS158110 261 DARLIEIAKQNAVEAGLGDLITFRQLQVADFQ-TEDEYGVVVANPPYGERLEDEEAVRQLYREMGIVYKR-MPT--WSVYVLTSYELFEEVYGKKATK 354
********************************.999*******************************999.889..********************** PP
UPF0020 183 kvkeknvklglll 195
k+k++n++l ++l
VIMSS158110 355 KRKLYNGYLRTDL 367
*******998765 PP
Or compare VIMSS158110 to CDD or PaperBLAST