VIMSS201013 has 711 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.2e-59 187.5 0.0 1.7e-57 180.4 0.0 2.2 2 VIMSS201013
Domain annotation for each sequence (and alignments):
>> VIMSS201013
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 180.4 0.0 1.7e-57 1.7e-57 1 194 [. 162 371 .. 162 373 .. 0.93
2 ! 4.8 0.0 0.0011 0.0011 78 158 .. 570 655 .. 544 691 .. 0.72
Alignments for each domain:
== domain 1 score: 180.4 bits; conditional E-value: 1.7e-57
UPF0020 1 RgyRvfngpapLketLAaalvrlagwkdg.epllDPmCGsGtilIEaallganiapgllrefvye.............lkaeaeeear.....aelkl 79
RgyR +g+apLke+LAa ++ ++gwk+ ++llDP+CGsGt+lIEaal++a+iapgl r+++++ + +ea+++a e+k+
VIMSS201013 162 RGYRSTTGEAPLKENLAANMLVRSGWKAApTTLLDPFCGSGTVLIEAALMAADIAPGLQRNRFGFehwrrhdkatwheIVEEAKARASlgvkrCEVKF 259
9*************************976389********************************9**********9995555555554555367778* PP
UPF0020 80 ygsDldrrvvqgareNaekagvgdliefsqadaakLrlkegevdvivtnpPYGerlgskkalekLYseflrelkrvlrgggrlvlltaenkalekale 177
ygsD+d+r+v+ a++Na++agv +lief++a+a +++ + + + ++tnpPYGerlgs +l +LY ++++++k+++ g + v+++ ++ +l +al+
VIMSS201013 260 YGSDIDSRLVALAKRNAQNAGVLELIEFNVANALNVE-PPAAEGYLITNPPYGERLGSVSELLQLYYQLGDKFKKEFGG--WKVAMLCSDIELISALK 354
*************************************.666789*********************************99..***************** PP
UPF0020 178 eralrkvkeknvklgll 194
+a +++k +n+ l++
VIMSS201013 355 LKADKQMKMFNGALECA 371
************99985 PP
== domain 2 score: 4.8 bits; conditional E-value: 0.0011
UPF0020 78 klygsDldrrvvqgareNaekagv.gdliefsqadaakLr.lkegevdvivtnpP...YGerlgskkalekLYseflrelkrvlrg 158
++ +D+ + +++ a+eN ++ g++ ef+qad + ++++d+i +pP +r+++ ++++ + ++l l + l+
VIMSS201013 570 SVTTVDMSNTYLAWAKENFALNNLsGKQYEFVQADCLQWIrDCNEQYDLIFIDPPtfsNSKRMEDSFDVQRDHVNLLGMLIKLLSP 655
47889*************77666516789******98754378889*********4222455555555555555555555555555 PP
Or compare VIMSS201013 to CDD or PaperBLAST