VIMSS2017814 has 279 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
6.8e-12 31.6 0.0 3.7e-11 29.2 0.0 2.0 2 VIMSS2017814
Domain annotation for each sequence (and alignments):
>> VIMSS2017814
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 29.2 0.0 3.7e-11 3.7e-11 71 147 .. 129 202 .. 108 208 .. 0.83
2 ? -0.8 0.0 0.057 0.057 39 69 .. 231 261 .. 225 275 .. 0.79
Alignments for each domain:
== domain 1 score: 29.2 bits; conditional E-value: 3.7e-11
UPF0020 71 eearaelklygsDldrrvvqgareNaekagvgdliefsqadaakLrlkegevdvivtnpPYGerlgskkal.ekLYse 147
+++r++ ++ ++D+ +++++ areNa++ +++ + + s+ ++++ +++d+iv+npPY r ++ + + LYse
VIMSS2017814 129 AKNRPDWSVTAADISQEALDLARENAKNQNLQIFLKKSD-CFTEIS---EKYDIIVSNPPYISREDESEVGlNVLYSE 202
67778999********************99987777666.455555...68**********99988776554778876 PP
== domain 2 score: -0.8 bits; conditional E-value: 0.057
UPF0020 39 sGtilIEaallganiapgllrefvyelkaea 69
sG i +E + + +++p l+r++ e++ +
VIMSS2017814 231 SGKIYLEIGYKQGQCVPELFRKHLPEKRVRT 261
8999999999999999999999998866544 PP
Or compare VIMSS2017814 to CDD or PaperBLAST