VIMSS363595 has 702 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
4.5e-72 228.0 0.0 7.9e-68 214.1 0.0 2.2 2 VIMSS363595
Domain annotation for each sequence (and alignments):
>> VIMSS363595
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 214.1 0.0 7.9e-68 7.9e-68 1 196 [. 162 375 .. 162 376 .. 0.97
2 ! 11.7 0.0 8.7e-06 8.7e-06 79 169 .. 564 657 .. 532 668 .. 0.83
Alignments for each domain:
== domain 1 score: 214.1 bits; conditional E-value: 7.9e-68
UPF0020 1 RgyRvfngpapLketLAaalvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvye.............lkaeaeeear...aelk..ly 80
RgyR+ +g ap+ketLAaa+v+++gw+ g+pllDPmCGsGt+lIEaa+l++++apgl+r ++++ +kaea+++ar ae++ +y
VIMSS363595 162 RGYRDRAGIAPIKETLAAAIVMRSGWQSGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFsgwaqhdeaiwqeVKAEAQTRARkglAEYSshFY 259
9**************************************************************************999999999999888566577** PP
UPF0020 81 gsDldrrvvqgareNaekagvgdliefsqadaakLr..lkegevdvivtnpPYGerlgskkalekLYseflrelkrvlrgggrlvlltaenkalekal 176
gsD+d+rv+q+ar+Na+ ag+g+li+f+++d+a+L+ l++g ++++++npPYGerl+s++al +L+s ++r +k+++ g ++++l++++ +l ++l
VIMSS363595 260 GSDSDARVIQRARTNARLAGIGELITFEVKDVAQLTnpLPKGPYGTVLSNPPYGERLDSEPALIALHSLLGRIMKNQFGG--WNLSLFSASPDLLSCL 355
************************************999***************************************99..**************** PP
UPF0020 177 eeralrkvkeknvklglllk 196
+ ra +++k+kn++l++++k
VIMSS363595 356 QLRADKQYKAKNGPLDCVQK 375
*****************997 PP
== domain 2 score: 11.7 bits; conditional E-value: 8.7e-06
UPF0020 79 lygsDldrrvvqgareNaekagvgdlie.fsqada.akLrlkegevdvivtnpP...YGerlgskkalekLYseflrelkrvlrgggrlvlltaen 169
+D+ r +++ a++N++ g++ + + + qad a Lr++++++d+i +pP +r++++ ++++ + ++++ lkr lr gg +++++n
VIMSS363595 564 TTTVDMSRTYLEWAERNLRLNGLTRRAHrLIQADClAWLREANEQFDLIFIDPPtfsNSKRMEDAFDVQRDHLALMKDLKRLLRAGG--TIMFSNN 657
5679******************9987653677776256889999**********6444689999999*****************944..4444444 PP
Or compare VIMSS363595 to CDD or PaperBLAST