PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS59498 to PF01170 (UPF0020)

VIMSS59498 has 725 amino acids

Query:       UPF0020  [M=197]
Accession:   PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence   Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.3e-49  154.7   0.0    2.4e-46  144.0   0.0    2.4  2  VIMSS59498  


Domain annotation for each sequence (and alignments):
>> VIMSS59498  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  144.0   0.0   2.4e-46   2.4e-46       1     194 [.     165     380 ..     165     383 .. 0.92
   2 !    8.3   0.0     9e-05     9e-05      73     130 ..     584     642 ..     554     685 .. 0.81

  Alignments for each domain:
  == domain 1  score: 144.0 bits;  conditional E-value: 2.4e-46
     UPF0020   1 RgyRvfngpapLketLAaalvrlagw....kdgepllDPmCGsGtilIEaallganiapgllrefvye.............lkaeaeeear...aelk. 78 
                 RgyR  +g apLke+LAaa + +agw     +g  l+DPmCG Gt+l+Eaal++a+iap l re++++             l++ea+++a    a  + 
  VIMSS59498 165 RGYRLQQGAAPLKENLAAAVLIRAGWpkiaAEGGALADPMCGVGTFLVEAALMAADIAPNLKRERWGFsswlghvpalwrkLHEEAQQRAAaglA--Rp 261
                 9*************************5554579********************************************999877777777665543..13 PP

     UPF0020  79 ...lygsDldrrvvqgareNaekagvgdliefsqadaakLr..lkegevdvivtnpPYGerlgskkalekLYseflrelkrvlrgggrlvlltaenkal 172
                    ++g + d+r++q a +N e+agv+d ++++q + a ++   ++g+ +++++npPYGerlg++ +l  LY++++++l + + g  +++ ++++  +l
  VIMSS59498 262 plwIRGYEADPRLIQPACNNIERAGVADWVKIYQGELATFEprPDKGQTGLVICNPPYGERLGDEASLLYLYQNLGERLRQSCIG--WSAGVFTGAPEL 358
                 466*************************************9966777**********************************9999..************ PP

     UPF0020 173 ekaleeralrkvkeknvklgll 194
                  k ++ r+ +++   n+ l + 
  VIMSS59498 359 GKRMGIRSHKQYAFWNGALACK 380
                 **********999999998886 PP

  == domain 2  score: 8.3 bits;  conditional E-value: 9e-05
     UPF0020  73 araelklygsDldrrvvqgareNaekagvgdliefsqadaak.LrlkegevdvivtnpP 130
                      +   +Dl + +++ ar+N++  g +d+  ++  d+ + Lr+++g++++i  +pP
  VIMSS59498 584 RGGARSTTSVDLSKTYLDWARRNLSLNGFSDKQRLVHGDVMEwLREDDGQYELIFIDPP 642
                 3345558899*****************************9874779999*********9 PP



Or compare VIMSS59498 to CDD or PaperBLAST