VIMSS6580042 has 452 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.1e-12 34.2 0.0 8.7e-11 28.0 0.0 2.3 1 VIMSS6580042
Domain annotation for each sequence (and alignments):
>> VIMSS6580042
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 28.0 0.0 8.7e-11 8.7e-11 4 139 .. 213 329 .. 211 333 .. 0.84
Alignments for each domain:
== domain 1 score: 28.0 bits; conditional E-value: 8.7e-11
UPF0020 4 RvfngpapLketLAaalvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvyelkaeaeeearaelklygsDldrrvvqg.....areN 95
R + g ++ ++L+ + ++a + +g+ ++DP+ G+G++l ga+ gsD+d r ++g ++N
VIMSS6580042 213 RSYIGITSFDAELSLVTAQMAMAAPGKLIYDPFVGTGSFLYTCSFFGAHTL--------------------------GSDIDGRQMRGkngrsIKSN 283
788888999999*************************************99..........................8888888887622222589* PP
UPF0020 96 aekagvgdl.iefsqadaakLr.lkegevdvivtnpPYGerlgskk 139
++++++ + + + d+++ + +k+ d+iv++pPYG r g+kk
VIMSS6580042 284 FRQYKLSPFfLDTFTGDVTNCPlRKNLLLDAIVCDPPYGVRAGAKK 329
*****98752567777887777447779***************987 PP
Or compare VIMSS6580042 to CDD or PaperBLAST