VIMSS6773 has 240 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
3.8e-13 35.7 0.5 1e-12 34.3 0.5 1.7 1 VIMSS6773
Domain annotation for each sequence (and alignments):
>> VIMSS6773
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 34.3 0.5 1e-12 1e-12 69 167 .. 61 168 .. 29 193 .. 0.73
Alignments for each domain:
== domain 1 score: 34.3 bits; conditional E-value: 1e-12
UPF0020 69 aeeearaelklygsDldrrvvqgareNaekagvgdliefsqadaakLr.lkegevdvivtnpPY...GerlgskkalekLYse.....flrelkrvlrgg 159
+ ++++++ ++ +++ld+ + ++a+eN ++ ++++i++ q d++++ +e+ +d+iv+npPY G++ +++++ + Y + l++++ +l+++
VIMSS6773 61 LAQRTEENCQIQAVELDPIAAKQAQENINNSVWKNRIQLTQVDIQHFLqTTEQTFDLIVANPPYfeqGIACKNEERELARYTKqshlnWLEWAATRLSEN 160
4456678899***********************************987577779**********666666665555443343212222466777777777 PP
UPF0020 160 grlvllta 167
gr+ ++++
VIMSS6773 161 GRISFVLP 168
77776654 PP
Or compare VIMSS6773 to CDD or PaperBLAST