VIMSS749203 has 558 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
2.2e-24 72.4 0.1 3e-23 68.7 0.0 2.6 2 VIMSS749203
Domain annotation for each sequence (and alignments):
>> VIMSS749203
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -3.6 0.0 0.4 0.4 4 73 .. 32 48 .. 24 77 .. 0.55
2 ! 68.7 0.0 3e-23 3e-23 3 190 .. 377 547 .. 375 553 .. 0.73
Alignments for each domain:
== domain 1 score: -3.6 bits; conditional E-value: 0.4
UPF0020 4 RvfngpapLketLAaalvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvyelkaeaeeea 73
R ++a+L++++ +++
VIMSS749203 32 RRRGMQAALRARI-----------------------------------------------------RQTL 48
4444444444444.....................................................3333 PP
== domain 2 score: 68.7 bits; conditional E-value: 3e-23
UPF0020 3 yRvfngpapLketLAaalvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvyelkaeaeeearaelklygsDldrrvvqgareNaeka. 99
R+f++p+++ + A+alv++ag+ ++ ++lDPmCG+G++l+Ea+l+ga+++ g D ++++v g+r+N+ +a
VIMSS749203 377 DRPFFQPGSMDPLEARALVNIAGAGPDATILDPMCGTGGLLLEAGLVGADVV--------------------------GGDAQEKMVSGTRKNLAYAl 448
69**************************************************..........................66666666666666664431 PP
UPF0020 100 .........gvgd..liefsqadaakLrlkegevdvivtnpPYGerlgskkalekLYseflrelkrvlrgggrlvlltaenkalekaleer..alrkv 184
d ++ + da +L+ +++ vd++v + PYG+ +++l L s l e++rv + ++ ++++ +a+ + a+ +
VIMSS749203 449 dgdghperaSYPDpgEWGVFRSDASALPVADDTVDAVVFDAPYGRQSRIEGDLAPLVSGALGEAARVAGR-----CVLVADRDWREAATGAgwAVTDY 541
1111111003333114445556******9999*******************************9997666.....33344555555555552333344 PP
UPF0020 185 keknvk 190
++v+
VIMSS749203 542 FKRRVH 547
445555 PP
Or compare VIMSS749203 to CDD or PaperBLAST