PaperBLAST – Find papers about a protein or its homologs

 

Align WP_010869937.1 to PF01170 (UPF0020)

WP_010869937.1 has 381 amino acids

Query:       UPF0020  [M=197]
Accession:   PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.8e-78  248.3   0.0    3.5e-78  247.9   0.0    1.1  1  WP_010869937.1  


Domain annotation for each sequence (and alignments):
>> WP_010869937.1  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  247.9   0.0   3.5e-78   3.5e-78       1     196 [.     166     374 ..     166     375 .. 0.97

  Alignments for each domain:
  == domain 1  score: 247.9 bits;  conditional E-value: 3.5e-78
         UPF0020   1 RgyRvfngpapLketLAaalvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvye..........lkaeaeeear...aelklygs 82 
                     RgyRvfn+pa+L++t+A++lv+l++wkd+e+llDPmCGsGti+IE+al+++ni+pg++re++y           l++++++e+    + +k++g+
  WP_010869937.1 166 RGYRVFNHPAHLNATIASSLVYLSDWKDDEMLLDPMCGSGTIPIEGALMKRNIPPGKFRENKYGfkfidifgyeLLDKIKKEIVenkNIYKIIGL 260
                     9**************************************************************99*********88999888776668899**** PP

         UPF0020  83 DldrrvvqgareNaekagvgdliefsqadaakLrlkegevdvivtnpPYGerlgskkalekLYseflrelkrvlrgggrlvlltaenkalekale 177
                     D+++++++ga++Na++a+v d+ief + da+kL++k +e dvi++npPYG+r+gsk++++kLY+efl+++k++++g++rl+++tae+k++++a++
  WP_010869937.1 261 DKNQKYLDGAKDNAKNAEVLDTIEFICGDATKLHEKFNESDVIIANPPYGIRIGSKRSVKKLYDEFLSSAKEIMHGSSRLIVITAEDKMFKDAIA 355
                     *********************************************************************************************** PP

         UPF0020 178 eralrkvkeknvklglllk 196
                     +++++ ++e+nv++g+l++
  WP_010869937.1 356 KNNFEVKEEFNVMFGGLMT 374
                     ***************9986 PP



Or compare WP_010869937.1 to CDD or PaperBLAST