PaperBLAST – Find papers about a protein or its homologs

 

Align WP_013035257.1 to PF01170 (UPF0020)

WP_013035257.1 has 464 amino acids

Query:       UPF0020  [M=197]
Accession:   PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.1e-12   34.1   0.0    2.3e-12   33.1   0.0    1.5  1  WP_013035257.1  


Domain annotation for each sequence (and alignments):
>> WP_013035257.1  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   33.1   0.0   2.3e-12   2.3e-12      19     145 ..     160     280 ..     157     339 .. 0.73

  Alignments for each domain:
  == domain 1  score: 33.1 bits;  conditional E-value: 2.3e-12
         UPF0020  19 alvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvyelkaeaeeearaelklygsDldrrvvqgareNaekagvgdliefsqadaa 113
                     a+v+  + + ++ + DP  G+G++lI a    ++i     +++ +  +++ e+++  + +l g++l ++  + +  N+    ++   +f++ d  
  WP_013035257.1 160 AIVKAVDPDHDDDIHDPAAGTGGFLIHAF---EHILE---KTNEGLDLSRDERRELMTENLSGMELVPETRRLGLMNLALHDLQ-PQNFEVGDSL 247
                     899999********************884...44442...222222333333344466669*****************998876.6789999*** PP

         UPF0020 114 kLr.lkegevdvivtnpPYGerlgskkalekLY 145
                     +L  ++++++dvi+tnpPYG   ++k+a +++ 
  WP_013035257.1 248 SLGpHTDESYDVILTNPPYGGNQKKKRARDDFM 280
                     **987888***************9999987664 PP



Or compare WP_013035257.1 to CDD or PaperBLAST