biolip::3ldgA has 377 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
2.7e-55 173.3 0.0 3.6e-55 172.8 0.0 1.2 1 biolip::3ldgA
Domain annotation for each sequence (and alignments):
>> biolip::3ldgA
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 172.8 0.0 3.6e-55 3.6e-55 4 195 .. 167 368 .. 165 370 .. 0.96
Alignments for each domain:
== domain 1 score: 172.8 bits; conditional E-value: 3.6e-55
UPF0020 4 RvfngpapLketLAaalvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvye............lkaeaeeearaelk..lygsDld 85
R + +ap+ke++Aaa++ l++w +++p++DP CGsGt+ IEaa++g niapg++r+f++e +++ea e+a ++++ + g+D+d
biolip::3ldgA 167 RGYRTEAPIKENMAAAIILLSNWFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEewpwvdealvtrVRNEADEQADYDIQldISGFDFD 262
6778899****************************************************************************888888******* PP
UPF0020 86 rrvvqgareNaekagvgdliefsqadaakLrlkegevdvivtnpPYGerlgskkalekLYseflrelkrvlrgggrlvlltaenkalekaleeral 181
r+v+ ar+Na++ g++d ++++q+ ++++ +++ ++v+++npPYGerl + ka++ LY+e++++++ l++ ++ ++++++ ++e+ ++++a
biolip::3ldgA 263 GRMVEIARKNAREVGLEDVVKLKQMRLQDFK-TNKINGVLISNPPYGERLLDDKAVDILYNEMGETFAP-LKT--WSQFILTNDTDFEQKFGRKAD 354
*******************************.8889********************************9.999..********************* PP
UPF0020 182 rkvkeknvklglll 195
+k+k++n+ l+ +l
biolip::3ldgA 355 KKRKLYNGSLKVDL 368
********998765 PP
Or compare biolip::3ldgA to CDD or PaperBLAST