biolip::3tm5A has 368 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
3.6e-42 130.4 0.0 5.9e-41 126.4 0.0 2.1 1 biolip::3tm5A
Domain annotation for each sequence (and alignments):
>> biolip::3tm5A
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 126.4 0.0 5.9e-41 5.9e-41 1 195 [. 191 357 .. 191 359 .. 0.94
Alignments for each domain:
== domain 1 score: 126.4 bits; conditional E-value: 5.9e-41
UPF0020 1 RgyRvfngpapLketLAaalvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvyelkaeaeeearaelklygsDldrrvvqgareNa 96
R +Rv+++pa+Lk+++A a+++la+++ g + lDPmCGsGtilIE al + ++g+++ r+++ ga+ Na
biolip::3tm5A 191 RPWRVYDHPAHLKASIANAMIELAELDGG-SVLDPMCGSGTILIELALRRYSGE------------------------IIGIEKYRKHLIGAEMNA 261
78***********************9755.678*************99776666........................9***************** PP
UPF0020 97 ekagvgdliefsqadaakLrlkegevdvivtnpPYGerlgskkalekLYseflrelkrvlrgggrlvlltaenkalekaleeralrkvkeknvklg 192
+agv d+i+f q da++L + ++vd ++n+PYG ++g+ ++ +LY +f +el++vl++ r v++t+e+ka+e+a++e+ ++ ++ + + +g
biolip::3tm5A 262 LAAGVLDKIKFIQGDATQLSQYVDSVDFAISNLPYGLKIGK-SMIPDLYMKFFNELAKVLEK--RGVFITTEKKAIEEAIAENGFEIIHHRVIGHG 354
********************9999***************95.689*****************..************************99999888 PP
UPF0020 193 lll 195
+l+
biolip::3tm5A 355 GLM 357
876 PP
Or compare biolip::3tm5A to CDD or PaperBLAST