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Align biolip::3v97A to PF01170 (UPF0020)

biolip::3v97A has 667 amino acids

Query:       UPF0020  [M=197]
Accession:   PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    2.9e-67  212.3   0.0      6e-64  201.5   0.0    2.3  2  biolip::3v97A  


Domain annotation for each sequence (and alignments):
>> biolip::3v97A  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  201.5   0.0     6e-64     6e-64       1     196 [.     163     373 ..     163     374 .. 0.97
   2 !    8.6   0.0   7.4e-05   7.4e-05      79     158 ..     536     613 ..     503     630 .. 0.78

  Alignments for each domain:
  == domain 1  score: 201.5 bits;  conditional E-value: 6e-64
        UPF0020   1 RgyRvfngpapLketLAaalvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvye.............lkaeaeeear...aelk.. 78 
                    RgyR+ +g ap+ketLAaa+v+++gw++g+pllDPmCGsGt+lIEaa+l++++apgl+r ++++             +kaea+++ar   ae++  
  biolip::3v97A 163 RGYRDRAGIAPIKETLAAAIVMRSGWQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFsgwaqhdeaiwqeVKAEAQTRARkglAEYSsh 258
                    9**************************************************************************999999999999888566577 PP

        UPF0020  79 lygsDldrrvvqgareNaekagvgdliefsqadaakLr..lkegevdvivtnpPYGerlgskkalekLYseflrelkrvlrgggrlvlltaenkal 172
                    +ygsD+d+rv+q+ar+Na+ ag+g+li+f+++d+a+L+  l++g ++++++npPYGe   s++al +L+s ++r +k+++ g  ++++l++++ +l
  biolip::3v97A 259 FYGSDSDARVIQRARTNARLAGIGELITFEVKDVAQLTnpLPKGPYGTVLSNPPYGE---SEPALIALHSLLGRIMKNQFGG--WNLSLFSASPDL 349
                    **************************************999***************7...69******************99..************ PP

        UPF0020 173 ekaleeralrkvkeknvklglllk 196
                     ++l+ ra +++k+kn++l++++k
  biolip::3v97A 350 LSCLQLRADKQYKAKNGPLDCVQK 373
                    *********************997 PP

  == domain 2  score: 8.6 bits;  conditional E-value: 7.4e-05
        UPF0020  79 lygsDldrrvvqgareNaekagvgdlie.fsqada.akLrlkegevdvivtnpPYGerlgskkalekLYseflrelkrvlrg 158
                       +D+ r +++ a++N++  g++++ + + qad  a Lr++++++d+i  +pP   + + +++  +L    ++ lkr lr 
  biolip::3v97A 536 TTTVDMSRTYLEWAERNLRLNGLTGRAHrLIQADClAWLREANEQFDLIFIDPPTFSAFDVQRDHLAL----MKDLKRLLRA 613
                    5679******************9988653677776256889999**********77777777666555....5556666666 PP



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