biolip::6h2vA has 210 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
3.3e-12 32.6 0.2 1.9e-11 30.1 0.2 2.0 1 biolip::6h2vA
Domain annotation for each sequence (and alignments):
>> biolip::6h2vA
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 30.1 0.2 1.9e-11 1.9e-11 33 142 .. 55 139 .. 24 175 .. 0.74
Alignments for each domain:
== domain 1 score: 30.1 bits; conditional E-value: 1.9e-11
UPF0020 33 lDPmCGsGtilIEaallganiapgllrefvyelkaeaeeearaelklygsDldrrvvqgareNaekagvgdliefsqadaakLr.lkegevdvivt 127
+D CG G + I a+lga +g+D+d+ +++ ++Nae+ ++++ i+++q d++ L ++++++d+++
biolip::6h2vA 55 ADLGCGCGVLSIGTAMLGAGLC-------------------------VGFDIDEDALEIFNRNAEEFELTN-IDMVQCDVCLLSnRMSKSFDTVIM 124
5555555555555555555555.........................8********************985.788888*****998999******* PP
UPF0020 128 npPYGerlgskkale 142
npP+G + ++ ++
biolip::6h2vA 125 NPPFGTKNNKGTDMA 139
*****9877666554 PP
Or compare biolip::6h2vA to CDD or PaperBLAST