PaperBLAST – Find papers about a protein or its homologs

 

Align P44842 to PF01205 (UPF0029)

P44842 has 206 amino acids

Query:       UPF0029  [M=106]
Accession:   PF01205.23
Description: Uncharacterized protein family UPF0029
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    4.7e-40  122.2   0.0    9.9e-40  121.2   0.0    1.5  2  P44842    


Domain annotation for each sequence (and alignments):
>> P44842  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  121.2   0.0   9.9e-40   9.9e-40       1     106 []      18     125 ..      18     125 .. 0.96
   2 ?   -2.4   0.0      0.28      0.28      49      68 ..     185     202 ..     156     204 .. 0.60

  Alignments for each domain:
  == domain 1  score: 121.2 bits;  conditional E-value: 9.9e-40
  UPF0029   1 kkSkFiahaapveseeeakelleelkkehkkAtHnvyAyrleg.ed.eierssddgEpsgtAGkpilevlekeeltnvlvvvtRyfGGikLGagglvraysk 100
              kkS+Fi+++ ++e  e+a+++ +++k+eh++A+H+++A ++++ +d  +  +sddgEp+gtAGkp+l++l++++l ++ +vv+Ry+GGi+LG+gglvray +
   P44842  18 KKSRFITYLQHTEGLEDARAFWAKIKQEHPNARHHCWAAVAGKpTDsLQLGFSDDGEPAGTAGKPMLSALQGSQLGEISAVVVRYYGGILLGTGGLVRAYGN 119
              89*************************************99865777899**************************************************** PP

  UPF0029 101 aakeal 106
               +++al
   P44842 120 GVQQAL 125
              **9986 PP

  == domain 2  score: -2.4 bits;  conditional E-value: 0.28
  UPF0029  49 rssddgEpsgtAGkpilevl 68 
               ss+  E+s  +G+ ++++l
   P44842 185 FSSELTEKS--SGRLVIQLL 202
              344445555..777777766 PP



Or compare P44842 to CDD or PaperBLAST