PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS76270 to PF01205 (UPF0029)

VIMSS76270 has 205 amino acids

Query:       UPF0029  [M=106]
Accession:   PF01205.23
Description: Uncharacterized protein family UPF0029
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence   Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    5.6e-39  118.8   0.0    7.3e-39  118.4   0.0    1.1  1  VIMSS76270  


Domain annotation for each sequence (and alignments):
>> VIMSS76270  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  118.4   0.0   7.3e-39   7.3e-39       1     106 []      19     126 ..      19     126 .. 0.96

  Alignments for each domain:
  == domain 1  score: 118.4 bits;  conditional E-value: 7.3e-39
     UPF0029   1 kkSkFiahaapveseeeakelleelkkehkkAtHnvyAyrleg.ed.eierssddgEpsgtAGkpilevlekeeltnvlvvvtRyfGGikLGagglvra 97 
                 kkS+Fi+ +a+++  e+ak+++e++++eh++A+H+++A++++  +d ++  +sddgEp+gtAGkp+l +l ++++ ++++vv+Ry+GGi+LG+gglv+a
  VIMSS76270  19 KKSRFITLLAHTDGVEAAKAFVESVRAEHPDARHHCVAWVAGApDDsQQLGFSDDGEPAGTAGKPMLAQLMGSGVGEITAVVVRYYGGILLGTGGLVKA 117
                 89*************************************99854777999************************************************* PP

     UPF0029  98 yskaakeal 106
                 y   +++al
  VIMSS76270 118 YGGGVNQAL 126
                 **9999986 PP



Or compare VIMSS76270 to CDD or PaperBLAST