PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS116354 to PF01458 (SUFBD)

VIMSS116354 has 420 amino acids

Query:       SUFBD  [M=218]
Accession:   PF01458.21
Description: SUF system FeS cluster assembly, SufBD
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.4e-65  205.5   0.3    5.7e-65  205.2   0.3    1.1  1  VIMSS116354  


Domain annotation for each sequence (and alignments):
>> VIMSS116354  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  205.2   0.3   5.7e-65   5.7e-65       3     218 .]     167     392 ..     165     392 .. 0.98

  Alignments for each domain:
  == domain 1  score: 205.2 bits;  conditional E-value: 5.7e-65
        SUFBD   3 fertlivveegaevtiieey..........agcgvveivvgknAklkyvevqnwsenvlnlatkraeegadakvelvevslggkltrkepsvelkgeg 90 
                  +++++i+v+++++++++e++          + +  ve++++ +A++k+  +++ +env+ + ++r+++g+da++++  + +++++++ +++++l g+g
  VIMSS116354 167 NKHIMIIVGKNSKISYLERLesrgegsdkaTANITVEVIARSGAQVKFAAIDRLGENVTAYISRRGKLGNDASIDWAIGVMNEGNVVADFDSDLIGNG 264
                  689***************999999888888778***************************************************************** PP

        SUFBD  91 aeaelngvylakgkqhldtgtkvdhngpntsseilskgvlkdksravfrGkikvekgaqktdahqecrnLllsdkaradtkPeleieaddvkcsHgAt 188
                  ++a+l+ v+l +g+q + ++t+v+  g n+ ++il +gv+ +k++ +f+G  ++ kga+++da+qe+r+L+lsd+ar+d++P+l+i+++dv+++H+A+
  VIMSS116354 265 SHADLKVVALSSGRQVQGIDTRVTNYGCNSIGNILQHGVILEKATLTFNGIGHIIKGAKGADAQQESRVLMLSDQARSDANPILLIDENDVTAGHAAS 362
                  ************************************************************************************************** PP

        SUFBD 189 vgkideeqlfYLmsRGlseeeArrlivrgf 218
                  +g++d+e ++YLmsRGl++++A+rl+vrgf
  VIMSS116354 363 IGQVDPEDMYYLMSRGLDKATAERLVVRGF 392
                  *****************************9 PP



Or compare VIMSS116354 to CDD or PaperBLAST