PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS15800 to PF01458 (SUFBD)

VIMSS15800 has 423 amino acids

Query:       SUFBD  [M=218]
Accession:   PF01458.21
Description: SUF system FeS cluster assembly, SufBD
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence   Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.2e-74  236.8   2.4    1.5e-74  236.4   2.4    1.1  1  VIMSS15800  


Domain annotation for each sequence (and alignments):
>> VIMSS15800  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  236.4   2.4   1.5e-74   1.5e-74       3     218 .]     170     393 ..     168     393 .. 0.98

  Alignments for each domain:
  == domain 1  score: 236.4 bits;  conditional E-value: 1.5e-74
       SUFBD   3 fertlivveegaevtiieey........agcgvveivvgknAklkyvevqnwsenvlnlatkraeegadakvelvevslggkltrkepsvelkgegaea 93 
                 + r+++ + egae+t+ie++        ++ +  +i+v++nA+l+++++  ++  ++++a++   +++da+  ++++ lgg++ r+++s++l+ge++++
  VIMSS15800 170 HYRHHLDLAEGAEATVIEHFvslndarhFTGARFTINVAANAHLQHIKLAFENPLSHHFAHNDLLLAEDATAFSHSFLLGGAVLRHNTSTQLNGENSTL 268
                 6789999***********9999888888778******************************************************************** PP

       SUFBD  94 elngvylakgkqhldtgtkvdhngpntsseilskgvlkdksravfrGkikvekgaqktdahqecrnLllsdkaradtkPeleieaddvkcsHgAtvgki 192
                 ++n++++  +++ +dt+t ++hn+  ++s++l+k++++dk+ravf+G+i v+++a ktd++++++nLl+++ a++dtkP+lei+addvkcsHgAtvg+i
  VIMSS15800 269 RINSLAMPVKNEVCDTRTWLEHNKGFCNSRQLHKTIVSDKGRAVFNGLINVAQHAIKTDGQMTNNNLLMGKLAEVDTKPQLEIYADDVKCSHGATVGRI 367
                 *************************************************************************************************** PP

       SUFBD 193 deeqlfYLmsRGlseeeArrlivrgf 218
                 d+eq+fYL+sRG+++++A+++i+++f
  VIMSS15800 368 DDEQIFYLRSRGINQQDAQQMIIYAF 393
                 ************************99 PP



Or compare VIMSS15800 to CDD or PaperBLAST